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HPC @ QMUL

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Introduction
Introduction
HPC compute nodes
HPC compute nodes
- Overview
- DDG nodes
- DDY nodes
- EHC nodes
- RDG nodes
- SBG nodes
- SDX nodes
- SMF nodes
- SRM nodes
- VHM nodes
- XDG nodes
- XHG nodes
- XLG nodes
- Andrena cluster
Using the cluster
Using the cluster
- Citing Apocrita in publications
- Moving from Grid Engine to Slurm
- Slurm Quick Reference
- Submitting jobs
  Submitting jobs
- Using arrays
- Monitoring jobs
- Debugging jobs
- Using modules
- Using GPUs
- Compiling C, C++ and Fortran Code
- Choosing a Python distribution
- Tuning job requests
- Job statistics
- Man pages
Storage
Storage
- Storage systems
- Quotas
- Scratch
- Archive
- Using $TMPDIR
- Moving data
- Deleting files
- Backups and snapshots
- Public datasets
- Globus
  Globus
Application documentation
Application documentation
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- Bioinformatics applications
  Bioinformatics applications
  - ABySS
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  - BamTools
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  - BGEN
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  - BLAST+
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  - BUCKy
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  - BWA
  - Canu
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  - DIAMOND
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  - Qualimap
  - QUAST
  - RAxML
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  - RELION
  - RepeatMasker
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  - SAMtools
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- Chemistry applications
  Chemistry applications
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- Engineering applications
  Engineering applications
  - Abaqus
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- Machine learning
  Machine learning
  - PyTorch
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- Mathematical applications
  Mathematical applications
  - Matlab
OnDemand
OnDemand
- Overview
- COLMAP
- CST Studio
- IGV
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